Biochemical Pathways
Gepasi v.3 3
Gepasi is a software package for modeling biochemical systems.
Pathways v.5.0
The Pathways Personal Life Planner, will help you to set goals for a more satisfying life, manage your time, and manage your personal finances. You can get a license to use Pathways completely free!
Pathways Into Darkness Rewritten v.0.5.1
An attempt to rewrite the game Pathways Into Darkness for PC.
Synthetic Biology Software Suite v.1.0.2
Synthetic Biology Software Suite (SynBioSS) is composed of a wiki for biochemical kinetic constants, a graphical interface for simulating synthetic biological pathways, and a simulator that runs on either a desktop or supercomputer.
Cytoscape v.2. 8. 2002
Cytoscape is an open source bioinformatics software platform for visualizing molecular interaction networks and biological pathways and integrating these networks with annotations, gene expression profiles and other state data.
CellDesigner v.4.1.0.6
CellDesigner is a structured diagram editor for drawing gene-regulatory and biochemical networks.
StochSim v.1 4
STOCHSIM is a stochastic simulator for biochemical reactions software tool. The particles are represented as individual software objects which react according to probabilities derived from concentrations and rate constants.
Advanced Pathway Painter v.2 26
This freeware program visualizes pathways (KEGG, GenMAPP, BioCarta...). The user has the possibility to display any kind of quantitative data from gene and protein experiments (e.g.
Blast2KEGG v.1.0 Alpha
Enhanced Pathways Prediction from Nr and ENZYME Nomenclature Database. Blast2KEGG picks the enzymes from predicated genes, and performs fuzzy matching from enzyme name to EC number. It is consisted of a KEGG viewer, an annotation editor,
Effectopedia v.0.9.12 Alpha
Describing adverse outcome pathways made easy. Effectopedia is open knowledge aggregation and collaboration tool that provides a means of describing adverse outcome pathways in encyclopedic manner. You can analyze adverse effect pathways and
Genetic Code v.1.0
Study the genetic code with this tool. Genetic Code can display the universal genetic code, the one- and three-letter amino acid codes, the biochemical structures of the amino acids,
STOChastic Kinetic Simulator v.2.0
STOChastic Kinetic Simulation of biochemical processes with Gillespie algorithm. Biochemical processes simulations made easy. STOChastic Kinetic Simulator (STOCKS) help you perform stochastic simulations of biochemical processes.